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how to use @threads to use multithreads when reading BAM file #44

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panxiaoguang opened this issue Nov 29, 2021 · 2 comments
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how to use @threads to use multithreads when reading BAM file #44

panxiaoguang opened this issue Nov 29, 2021 · 2 comments

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@panxiaoguang
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panxiaoguang commented Nov 29, 2021 •
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how to use @threads to read BAM file more than one core?
@panxiaoguang panxiaoguang changed the title how to use @threads to use multithreads for reading BAM file how to use @threads to use multithreads when reading BAM file Nov 29, 2021
@CiaranOMara
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Multiple threads are automatically used to deflate chunks when reading. However, there is currently an issue that affects the use of multiple threads in XAM.jl (see BioJulia/BGZFStreams.jl#27).

Unfortunately, support for a distributed reader is not yet added to XAM.jl (see BioJulia/BioAlignments.jl#4).

@panxiaoguang
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Multiple threads are automatically used to deflate chunks when reading. However, there is currently an issue that affects the use of multiple threads in XAM.jl (see BioJulia/BGZFStreams.jl#27).

Unfortunately, support for a distributed reader is not yet added to XAM.jl (see BioJulia/BioAlignments.jl#4).

than you ! I got it.

This was referenced Feb 1, 2024
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@CiaranOMara @panxiaoguang