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EDAM - EDAM - Bioscientific data analysis ontology

Radarplot

HTML-Version Radarplot for Domains of ontology EDAM

Ontology

Aspect Description
Full Name EDAM - Bioscientific data analysis ontology
Synonyms/Alternative Names -
Ontology Acronym EDAM
Creator(s) & Issuing Organisation Melissa Black, Lucie Lamothe, Hager Eldakroury, Mads Kierkegaard, Ankita Priya, Anne Machinda, Uttam Singh Khanduja, Drashti Patoliya, Rashika Rathi, Tawah Peggy Che Nico, Gloria Umutesi, Claudia Blankenburg, Anita Op, Precious Chieke, Omodolapo Babatunde, Steve Laurie, Steffen Neumann, Veit Schwämmle, Ivan Kuzmin, Chris Hunter, Jonathan Karr, Jon Ison, Alban Gaignard, Bryan Brancotte, Hervé Ménager, Matúš Kalaš
Nature of Organisational Structure Group of MaintainersMaintainer

References

Aspect Description
Organisational Website https://github.com/edamontology/edamontology
Persistent URI of Ontology File http://edamontology.org/EDAM.owl
Link to Documentation https://edamontology.github.io/edam-browser
Link to Version directory https://github.com/edamontology/edamontology/tree/main/releases
Optional links (Papers, Repos,...) https://doi.org/10.7490/f1000research.1118900.1

Ontology Modeling And Availability

Aspect Description
Ontology Formats Provided ttl
Degree of Inference/Composition non-inferred; non-compacted
License GNU LGPL v3.0
Validated Resoning with Fact++
Shortest reasoning time 1910 ms
Aligned with Top Level Ontology Imports Ontology(ies)
Imports Ontology(ies) Prefixes used
Prefixes used -
Class annotation types rdfs:Label; rdfs:comment

Domain of Interest Represented (contained, related: broader/narrower, missing)

Aspect Description
Top Level Ontology missing
Process Design, Energy and Cost Data missing
Heat, Transport and Kinetic Data missing
Characterisation Data contained
Performance Data related: narrower
Operando Data missing
Synthesis Data related: broader
Process Modeling missing
Material Modeling missing
Chemical Substance Modeling related: broader
Photocatalysis missing
Electrocatalysis missing
Heterogenous catalysis missing
Homogenous catalysis missing
Biocatalysis related: narrower

Ontology Characteristics

Aspect Description
Axioms 34927
Logical 5179
Declaration 3550
Class count 3473
Object property count 12
Data property count 0
Individual count 0
Annotation Property count 70

Comments

An Ontology consisting of several Terms relevant for DANN and Enzymatic activity. Imports OBO Ontology terms and classes while not being alligned to an Ontology. Good representation for description of proteins and enzyme kinetics. EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life-cycle.