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assert HEUDICONV_VERSION_JSON_KEY not in json_ AssertionError. XA30 subjects failing conversion. #687
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Do you remember by any chance the exact command line for the heudiconv invocation you have used? e.g. have you used |
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great, so it is the |
Okay, I tried it without the |
well -- that one rightfully says correct thing:
are you trying to reconvert an existing subject/session or this is "from scratch" (whenever there is no |
I'm creating it from scratch. I've been deleting the |
if you have stored output from logging while running heudiconv -- does it mention that sub-20071_ses-53043_task-rest_run-01_echo-1_part-mag_bold.nii.gz twice? What is your auto.edit.txt for this series? (didn't analyze heuristic thoroughly). I wonder what to places decide that there is multiple identically named files. may be your heuristic also manages to bring multiple sequences under the same name |
Summary
Platform details:
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OS : Ubuntu 18.04.6 LTS
Python version: 3.9.16
Heudiconv version .13.1
I've been trying to convert subjects using a Siemens fmri scanner with XA30 software. Something is going wrong when the jsons are being created, but I have not been able to figure out what.
Here is the last part of the output I am getting.
Traceback (most recent call last): File "/home/usr/badenn/.local/bin/heudiconv", line 8, in <module> sys.exit(main()) File "/home/usr/badenn/.local/lib/python3.9/site-packages/heudiconv/cli/run.py", line 30, in main workflow(**kwargs) File "/home/usr/badenn/.local/lib/python3.9/site-packages/heudiconv/main.py", line 463, in workflow prep_conversion( File "/home/usr/badenn/.local/lib/python3.9/site-packages/heudiconv/convert.py", line 255, in prep_conversion convert( File "/home/usr/badenn/.local/lib/python3.9/site-packages/heudiconv/convert.py", line 635, in convert tuneup_bids_json_files(bids_outfiles) File "/home/usr/badenn/.local/lib/python3.9/site-packages/heudiconv/bids.py", line 334, in tuneup_bids_json_files assert HEUDICONV_VERSION_JSON_KEY not in json_ AssertionError
Any help that can be given would be greatly appreciated.
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