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Add more tests

Add more tests #12

Triggered via push July 19, 2023 05:25
Status Success
Total duration 3m 27s
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1 error and 1 warning
Documentation: ../../../.julia/packages/Documenter/bFHi4/src/DocTests.jl#L373
doctest failure in src/parser.md:183-195 ```jldoctest parse1 julia> parse_fasta(">abc\nTAGA\nAAGA\n>header\nAAAG\nGGCG") ERROR: Error during FSM execution at buffer position 33. Last 32 bytes were: ">abc\nTAGA\nAAGA\n>header\nAAAG\nGGCG" Observed input: EOF at state 5. Outgoing edges: * '\n'/seqline * [ACGT] Input is not in any outgoing edge, and machine therefore errored. ``` Subexpression: parse_fasta(">abc\nTAGA\nAAGA\n>header\nAAAG\nGGCG") Evaluated output: ERROR: Error during FSM execution at buffer position 33. Last 32 byte(s) were: ">abc\nTAGA\nAAGA\n>header\nAAAG\nGGCG" Observed input: EOF at state 5. Outgoing edges: * '\n'/seqline * [ACGT] Input is not in any outgoing edge, and machine therefore errored. Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] throw_input_error(machine::Automa.Machine, state::Int64, byte::Nothing, memory::Automa.SizedMemory, index::Int64) @ Automa ~/work/Automa.jl/Automa.jl/src/machine.jl:237 [3] macro expansion @ ~/work/Automa.jl/Automa.jl/src/codegen.jl:709 [inlined] [4] parse_fasta(data::String) @ Main ./none:6 [5] top-level scope @ none:1 Expected output: ERROR: Error during FSM execution at buffer position 33. Last 32 bytes were: ">abc\nTAGA\nAAGA\n>header\nAAAG\nGGCG" Observed input: EOF at state 5. Outgoing edges: * '\n'/seqline * [ACGT] Input is not in any outgoing edge, and machine therefore errored. diff = Warning: Diff output requires color. ERROR: Error during FSM execution at buffer position 33. Last 32 bytes byte(s) were: ">abc\nTAGA\nAAGA\n>header\nAAAG\nGGCG" Observed input: EOF at state 5. Outgoing edges: * '\n'/seqline * [ACGT] Input is not in any outgoing edge, and machine therefore errored.errored. Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] throw_input_error(machine::Automa.Machine, state::Int64, byte::Nothing, memory::Automa.SizedMemory, index::Int64) @ Automa ~/work/Automa.jl/Automa.jl/src/machine.jl:237 [3] macro expansion @ ~/work/Automa.jl/Automa.jl/src/codegen.jl:709 [inlined] [4] parse_fasta(data::String) @ Main ./none:6 [5] top-level scope @ none:1
Documentation
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/