Git failed to fetch [email protected]:BioJulia/BED.jl.git This can be caused by a DOCUMENTER_KEY variable that is not correctly set up. Make sure that the environment variable is properly set up as a Base64-encoded string of the SSH private key. You may need to re-generate the keys with DocumenterTools.

Failed to push: exception = failed process: Process(setenv(`/usr/bin/git fetch upstream`,["DOCUMENTER_KEY=***", "PATH=/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin", "DOTNET_SKIP_FIRST_TIME_EXPERIENCE=1", "GITHUB_RUN_NUMBER=100", "GITHUB_REF_NAME=develop", "RUNNER_ARCH=X64", "PERFLOG_LOCATION_SETTING=RUNNER_PERFLOG", "GOROOT_1_20_X64=/opt/hostedtoolcache/go/1.20.14/x64", "ACCEPT_EULA=Y", "GOROOT_1_21_X64=/opt/hostedtoolcache/go/1.21.12/x64", "ANT_HOME=/usr/share/ant", "RUNNER_USER=runner", "LEIN_HOME=/usr/local/lib/lein", "GITHUB_REPOSITORY_ID=152175618", "GITHUB_ACTOR=jakobnissen", "GITHUB_WORKFLOW_REF=BioJulia/BED.jl/.github/workflows/Documentation.yml@refs/heads/develop", "ANDROID_NDK_LATEST_HOME=/usr/local/lib/android/sdk/ndk/26.3.11579264", "SYSTEMD_EXEC_PID=597", "RUNNER_ENVIRONMENT=github-hosted", "OPENBLAS_DEFAULT_NUM_THREADS=1", "GIT_TEMPLATE_DIR=/usr/share/git-core/templates", "STATS_D_D=true", "USER=runner", "CONDA=/usr/share/miniconda", "JULIA_PKG_SERVER_REGISTRY_PREFERENCE=eager", "GITHUB_REF_PROTECTED=false", "GITHUB_SHA=a1d2efbe8671d083f07a7d8a18de55fc48590489", "JAVA_HOME=/usr/lib/jvm/temurin-11-jdk-amd64", "GITHUB_API_URL=https://api.github.com", "GITHUB_RUN_ATTEMPT=1", "GITHUB_ACTIONS=true", "STATS_V3PS=true", "VCPKG_INSTALLATION_ROOT=/usr/local/share/vcpkg", "STATS_VMFE=true", "STATS_EXT=true", "ANDROID_SDK_ROOT=/usr/local/lib/android/sdk", "SWIFT_PATH=/usr/share/swift/usr/bin", "GITHUB_ENV=/home/runner/work/_temp/_runner_file_commands/set_env_dd58f1d6-74fc-4bde-9ae9-6f5046fda06c", "JAVA_HOME_17_X64=/usr/lib/jvm/temurin-17-jdk-amd64", "GITHUB_ACTION_PATH=/home/runner/work/_actions/julia-actions/julia-docdeploy/v1", "RUNNER_PERFLOG=/home/runner/perflog", "RUNNER_NAME=GitHub Actions 19", "EDGEWEBDRIVER=/usr/local/share/edge_driver", "GITHUB_RUN_ID=10169147551", "GHCUP_INSTALL_BASE_PREFIX=/usr/local", "ImageOS=ubuntu22", "NVM_DIR=/home/runner/.nvm", "GIT_SSH_COMMAND=ssh -F /tmp/jl_ny46Ec", "GITHUB_HEAD_REF=", "GITHUB_RETENTION_DAYS=90", "GITHUB_SERVER_URL=https://github.com", "GITHUB_OUTPUT=/home/runner/work/_temp/_runner_file_commands/set_output_dd58f1d6-74fc-4bde-9ae9-6f5046fda06c", "STATS_UE=true", "GITHUB_JOB=Documenter", "DEBIAN_FRONTEND=noninteractive", "RUNNER_TRACKING_ID=github_0a40243f-fe39-48ed-9101-df01db73732d", "RUNNER_TOOL_CACHE=/opt/hostedtoolcache", "HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS=3650", "AZURE_EXTENSION_DIR=/opt/az/azcliextensions", "HOMEBREW_NO_AUTO_UPDATE=1", "CHROMEWEBDRIVER=/usr/local/share/chromedriver-linux64", "GITHUB_ACTION_REPOSITORY=", "GITHUB_WORKFLOW=Documentation", "GITHUB_ACTION=__julia-actions_julia-docdeploy", "HOME=/home/runner", "JAVA_HOME_8_X64=/usr/lib/jvm/temurin-8-jdk-amd64", "GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json", "GITHUB_STEP_SUMMARY=/home/runner/work/_temp/_runner_file_commands/step_summary_dd58f1d6-74fc-4bde-9ae9-6f5046fda06c", "SGX_AESM_ADDR=1", "GITHUB_REF=refs/heads/develop", "GITHUB_REPOSITORY=BioJulia/BED.jl", "INVOCATION_ID=57def855111f45f0a69ae135a7fd3237", "ImageVersion=20240721.1.0", "JAVA_HOME_21_X64=/usr/lib/jvm/temurin-21-jdk-amd64", "ANDROID_NDK=/usr/local/lib/android/sdk/ndk/25.2.9519653", "LANG=C.UTF-8", "STATS_D=true", "GITHUB_GRAPHQL_URL=https://api.github.com/graphql", "SHLVL=1", "DOTNET_MULTILEVEL_LOOKUP=0", "XDG_RUNTIME_DIR=/run/user/1001", "GOROOT_1_22_X64=/opt/hostedtoolcache/go/1.22.5/x64", "RUNNER_WORKSPACE=/home/runner/work/BED.jl", "GITHUB_STATE=/home/runner/work/_temp/_runner_file_commands/save_state_dd58f1d6-74fc-4bde-9ae9-6f5046fda06c", "GITHUB_BASE_REF=", "_=/usr/bin/julia", "GRADLE_HOME=/usr/share/gradle-8.9", "GITHUB_ACTION_REF=", "DEPLOYMENT_BASEPATH=/opt/runner", "PIPX_HOME=/opt/pipx", "GITHUB_REPOSITORY_OWNER_ID=6486271", "GITHUB_ACTOR_ID=23193950", "ANDROID_NDK_ROOT=/usr/local/lib/android/sdk/ndk/25.2.9519653", "***", "ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE=/opt/actionarchive

Process completed with exit code 1.

linkcheck 'https://biojulia.github.io/BED.jl/stable' status: 301, redirects to 'https://biojulia.dev/BED.jl/stable'

linkcheck 'https://biojulia.github.io/BED.jl/dev/' status: 301, redirects to 'https://biojulia.dev/BED.jl/dev/'

linkcheck 'http://semver.org' status: 301, redirects to 'https://semver.org/'

`curl -sI --proto =http,https,ftp,ftps --user-agent 'Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/51.0.2704.103 Safari/537.36' -H 'accept-encoding: gzip, deflate, br' 'https://nvie.com/posts/a-successful-git-branching-model/ "original blog post"' --max-time 10 -o /dev/null --write-out '%{http_code} %{url_effective} %{redirect_url}'` failed: exception = failed process: Process(`curl -sI --proto =http,https,ftp,ftps --user-agent 'Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/51.0.2704.103 Safari/537.36' -H 'accept-encoding: gzip, deflate, br' 'https://nvie.com/posts/a-successful-git-branching-model/ "original blog post"' --max-time 10 -o /dev/null --write-out '%{http_code} %{url_effective} %{redirect_url}'`, ProcessExited(3)) [3]

linkcheck 'https://codecov.io/gh/BioJulia/BED.jl' status: 301, redirects to 'https://app.codecov.io/gh/BioJulia/BED.jl'

linkcheck 'https://opencollective.com/biojulia/sponsor/0/website' status: 301, redirects to 'https://triplebyte.com/os/opencollective?utm_source=opencollective&utm_medium=github&utm_campaign=biojulia'

linkcheck 'https://opencollective.com/biojulia/sponsor/1/website' status: 301, redirects to 'https://opencollective.com/biojulia?utm_source=opencollective&utm_medium=github&utm_campaign=biojulia#support'

linkcheck 'https://opencollective.com/biojulia/sponsor/2/website' status: 404.

linkcheck 'https://opencollective.com/biojulia/sponsor/3/website' status: 404.

linkcheck 'https://opencollective.com/biojulia/sponsor/4/website' status: 404.