v3.1.0

BioAlignments v3.1.0

Diff since v3.0.0

Merged pull requests:

• Grantham's substitution matrix (#88) (@KaparaNewbie)
• Release v3.1.0 (#89) (@MillironX)

v3.0.0

BioAlignments v3.0.0

Diff since v2.3.0

Closed issues:

• ref2seq returns a position outside of the sequence length (#56)

Merged pull requests:

• Update the alignment figure (#62) (@alyst)
• Add support for 'meta' alignment operations (OP_PAD and OP_HARD_CLIP) (#64) (@MillironX)
• Add getter methods (and forwarded getter methods) for alignment types (#83) (@MillironX)
• Release v2.3.0 (#85) (@MillironX)
• Release v3.0.0 (#86) (@MillironX)

v2.3.0

BioAlignments v2.3.0

Diff since v2.2.0

Closed issues:

• Outdated documentation for SAM/BAM in BioAlignments is first hit in search (#82)

Merged pull requests:

• Hotfix/2.2.0 (#76) (@CiaranOMara)

v2.2.0

BioAlignments v2.2.0

Diff since v2.1.0

Closed issues:

• TagBot not triggering. (#67)
• Do these methods work and are they tested? (#74)

Merged pull requests:

• Add more SubstitutionMatrix operations (#60) (@timholy)
• Add downstream tests (#70) (@CiaranOMara)
• Add ssh key to TagBot workflow (#71) (@CiaranOMara)
• BioSequences v3 and BioSymbols v5 (#72) (@CiaranOMara)
• Housekeeping (#77) (@CiaranOMara)
• Doctests (#78) (@CiaranOMara)

v2.1.0

BioAlignments v2.1.0

Diff since v2.0.1

Closed issues:

• Lack of an article to cite BioAlignments.jl (#65)

v2.0.1 zenodo release

Patch version

v2.0.0

BioAlignments v2.0.0

Diff since v1.0.1

Merged pull requests:

• Release/v2.0.0 (#41) (@CiaranOMara)

Patch update

v1.0.1

Minor updates

The julia v0.7 / v1.0 release

v1.0.0

Ignore .DS_Store files and update docs

Version 3 - Long CIGAR support

Added

• Contributing files were added to this project.
• A method called BAM.ispositivestrand is added to test for the relevant flag
  in BAM records. Thanks @phaverty 😄
• Support for records with CIGAR strings with >65535 op-codes has been added.

Changed

• Documentation has been updated and uses the Documenter.jl native html
  generator.