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Release/v0.4.0 #66

Merged
merged 22 commits into from
Jan 27, 2024
Merged

Release/v0.4.0 #66

merged 22 commits into from
Jan 27, 2024

Commits on Oct 13, 2022

  1. added method for handling different bam index types

    @jonathanBieler
    jonathanBieler committed Oct 13, 2022
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  2. update docstring

    @jonathanBieler
    jonathanBieler committed Oct 13, 2022
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Commits on Oct 14, 2022

  1. Merge branch 'master' into develop

    @CiaranOMara
    CiaranOMara committed Oct 14, 2022
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  2. Merge pull request #56 from jonathanBieler/bam_index_method 

    Added method for handling different bam index types.
    @CiaranOMara
    CiaranOMara authored Oct 14, 2022
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  3. Update CHANGELOG

    @CiaranOMara
    CiaranOMara committed Oct 14, 2022
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Commits on Feb 28, 2023

  1. Subtype from XAMReader and XAMWriter

    @CiaranOMara
    CiaranOMara committed Feb 28, 2023
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  2. Subtype from XAMRecord

    @CiaranOMara
    CiaranOMara committed Feb 28, 2023
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  3. Fun with flags 

    Implements flag queries.
    @CiaranOMara
    CiaranOMara committed Feb 28, 2023
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  4. Add doi to README

    @CiaranOMara
    CiaranOMara committed Feb 28, 2023
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Commits on May 1, 2023

  1. Improve Slack link

    @CiaranOMara
    CiaranOMara committed May 1, 2023
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Commits on May 2, 2023

  1. Check that EOF_BLOCK gets written

    @CiaranOMara
    CiaranOMara committed May 2, 2023
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Commits on Jul 3, 2023

  1. Update hts-files.md 

    Fix find -> findall for headers
    @jonathanBieler
    jonathanBieler authored Jul 3, 2023
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Commits on Jul 6, 2023

  1. Merge pull request #62 from jonathanBieler/patch-1 

    Fix deprecated find in header docs
    @kescobo
    kescobo authored Jul 6, 2023
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Commits on Jan 15, 2024

  1. Update Automa to v1

    @jakobnissen
    jakobnissen committed Jan 15, 2024
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Commits on Jan 16, 2024

  1. Update CHANGELOG

    @CiaranOMara
    CiaranOMara committed Jan 16, 2024
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  2. Increment version

    @CiaranOMara
    CiaranOMara committed Jan 16, 2024
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  3. Update UnitTests workflow 

    - Add GitHub "annotations"
- Update codecov-action
    @CiaranOMara
    CiaranOMara committed Jan 16, 2024
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Commits on Jan 18, 2024

  1. Update UnitTests badge

    @CiaranOMara
    CiaranOMara committed Jan 18, 2024
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  2. Update Documentation workflow

    @CiaranOMara
    CiaranOMara committed Jan 18, 2024
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  3. Update TagBot workflow

    @CiaranOMara
    CiaranOMara committed Jan 18, 2024
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Commits on Jan 20, 2024

  1. Pluralise flag

    @CiaranOMara
    CiaranOMara committed Jan 20, 2024
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Commits on Jan 22, 2024

  1. Better align flags.jl nomenclature with the SAMv1 specification

    @CiaranOMara
    CiaranOMara committed Jan 22, 2024
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