Fix table copy (Closes: #1208) #181
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| name: Wheels | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| # Publish when a (published) GitHub Release is created. | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - 'releases/**' | |
| - 'ci/**' | |
| tags: | |
| - v* | |
| pull_request: | |
| branches: | |
| - master | |
| - 'releases/**' | |
| - 'ci/**' | |
| release: | |
| types: | |
| - published | |
| # TODO: | |
| # The scheduled version of this job should really download and install NumPy | |
| # from scientific-python-nightly-wheels | |
| schedule: | |
| - cron: '12 13 * * 0' | |
| permissions: | |
| contents: read | |
| jobs: | |
| build_sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| with: | |
| fetch-depth: 0 | |
| submodules: true | |
| - uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1 | |
| name: Install Python | |
| with: | |
| python-version: 3.x | |
| - name: Install APT packages | |
| if: contains(${{ matrix.os }}, 'ubuntu') | |
| run: | | |
| sudo apt update | |
| # Keep in sync with "Prerequisites" in User's Guide. | |
| sudo apt install libbz2-dev libhdf5-serial-dev | |
| sudo apt install latexmk texlive-fonts-recommended texlive-latex-recommended texlive-latex-extra texlive-plain-generic | |
| - name: Install dependencies | |
| run: | | |
| # Keep in sync with ``build-system.requires`` in ``pyproject.toml``. | |
| python -m pip install --require-hashes -r ./.github/workflows/requirements/build-requirements.txt | |
| python -m pip install --require-hashes -r requirements.txt | |
| # Keep in sync with ``project.optional-dependencies.doc`` in ``pyproject.toml``. | |
| python -m pip install --require-hashes -r ./.github/workflows/requirements/optional-requirements.txt | |
| - name: Build dist (sdist and docs) | |
| run: make PYTHON=python dist | |
| - uses: actions/upload-artifact@0b2256b8c012f0828dc542b3febcab082c67f72b # v4.3.4 | |
| with: | |
| path: dist/* | |
| name: dist | |
| build_wheels: | |
| name: Build ${{ matrix.os }} ${{ matrix.arch }} ${{ matrix.build }} wheels | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| # Keep in sync with "Prerequisites" in User's Guide. | |
| HDF5_VERSION: 1.14.3 # H5Dchunk_iter needs at least 1.14.1 | |
| MACOSX_DEPLOYMENT_TARGET: "10.9" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| arch: x86_64 | |
| build: 'cp*' | |
| - os: macos-13 | |
| arch: x86_64 | |
| build: 'cp*' | |
| - os: macos-14 | |
| arch: arm64 | |
| build: 'cp*' | |
| - os: windows-latest | |
| arch: AMD64 | |
| build: 'cp*' | |
| # The aarch64 wheels are very slow so split into separate jobs | |
| - os: ubuntu-latest | |
| arch: aarch64 | |
| build: 'cp310-*' | |
| - os: ubuntu-latest | |
| arch: aarch64 | |
| build: 'cp311-*' | |
| - os: ubuntu-latest | |
| arch: aarch64 | |
| build: 'cp312-*' | |
| steps: | |
| - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| with: | |
| fetch-depth: 0 | |
| submodules: true | |
| - uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1 | |
| name: Install Python on Unix | |
| with: | |
| python-version: '3.12' | |
| if: runner.os != 'Windows' | |
| - name: Install Python and dependencies on Windows | |
| uses: mamba-org/setup-micromamba@f8b8a1e23a26f60a44c853292711bacfd3eac822 # v1.9.0 | |
| with: | |
| environment-name: build | |
| create-args: > | |
| python=3.12 blosc c-blosc2 bzip2 hdf5 lz4 snappy zstd zlib pkgconfig | |
| init-shell: bash powershell | |
| if: runner.os == 'Windows' | |
| - uses: docker/setup-qemu-action@49b3bc8e6bdd4a60e6116a5414239cba5943d3cf # v3.2.0 | |
| if: runner.os == 'Linux' && matrix.arch != 'x64_64' | |
| name: Set up QEMU on Linux | |
| - uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| id: deps-cache | |
| with: | |
| path: hdf5_build | |
| # Instead of a hashFiles('**/wheels.yml') appended here, just use a counter. | |
| # It allows us to modify this file without having to constantly rebuild HDF5 | |
| # (which takes almost an hour on Linux emulated aarch64). | |
| key: ${{ runner.os }}-${{ matrix.arch }}-deps-cache-${{ hashFiles('**/get_hdf5.sh') }}-${{ env.HDF5_VERSION }}-1 | |
| if: runner.os != 'Windows' | |
| - name: Build dependencies | |
| env: | |
| CFLAGS: -g0 | |
| HDF5_DIR: ${{ github.workspace }}/hdf5_build | |
| HDF5_VERSION: 1.14.3 | |
| MACOSX_DEPLOYMENT_TARGET: "10.9" | |
| if: runner.os != 'Windows' && steps.deps-cache.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir hdf5_build | |
| if [[ "${{ runner.os }}" = 'Linux' ]]; then | |
| docker run --rm -e HDF5_DIR=/io/hdf5_build -e CFLAGS="$CFLAGS" -e HDF5_VERSION="$HDF5_VERSION" -v `pwd`:/io:rw quay.io/pypa/manylinux2014_${{ matrix.arch }} /io/ci/github/get_hdf5.sh | |
| else | |
| HDF5_DIR=`pwd`/hdf5_build ci/github/get_hdf5.sh | |
| fi | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install --require-hashes -r ./.github/workflows/requirements/wheels-requirements.txt | |
| - name: Build ${{ matrix.build }} wheels | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_BUILD: '${{ matrix.build }}' | |
| CIBW_ARCHS: '${{ matrix.arch }}' | |
| - name: Copy requirements.txt | |
| run: | | |
| cp requirements.txt ./wheelhouse/ | |
| - uses: actions/upload-artifact@0b2256b8c012f0828dc542b3febcab082c67f72b # v4.3.4 | |
| with: | |
| path: | | |
| ./wheelhouse/*.whl | |
| ./wheelhouse/*.txt | |
| name: cibw-wheels-${{ matrix.os }}-${{ matrix.arch }}-${{ strategy.job-index }} | |
| twine_check: | |
| needs: [ build_sdist, build_wheels ] | |
| name: Twine check | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| with: | |
| fetch-depth: 0 | |
| submodules: true | |
| - uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8 | |
| with: | |
| pattern: '*' | |
| merge-multiple: true | |
| path: wheelhouse | |
| - name: List downloaded artifacts | |
| run: ls -alR ./wheelhouse/ | |
| - name: Install Python | |
| uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1 | |
| with: | |
| python-version: '3.x' | |
| - name: Install twine | |
| run: | | |
| python -m pip install --require-hashes -r ./.github/workflows/requirements/wheels-requirements.txt | |
| - name: Check sdist and wheels | |
| run: | | |
| python -m twine check *.whl tables-*.tar.gz | |
| working-directory: wheelhouse | |
| - name: Upload wheel | |
| uses: scientific-python/upload-nightly-action@b67d7fcc0396e1128a474d1ab2b48aa94680f9fc # 0.5.0 | |
| if: github.repository == 'PyTables/PyTables' && github.event_name == 'schedule' | |
| with: | |
| artifacts_path: wheelhouse | |
| anaconda_nightly_upload_token: ${{secrets.ANACONDA_ORG_UPLOAD_TOKEN}} |