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Issues list

how is alpha fold 3 trained
#1031 opened Oct 16, 2024 by joepareti54
requirement:tensorflow-cpu
#1030 opened Oct 15, 2024 by nibingwei123
Alphafold runs will not find the GPU
#1029 opened Oct 14, 2024 by tuttlelm
Installation without docker
#1026 opened Oct 8, 2024 by fglaser
lost some output files
#1023 opened Oct 6, 2024 by xjhzjucas
Endless "[Perf]: MatMul reference implementation being executed generated" messages and dramatic inference slowdown upon updating to docker 27.3.1
#1021 opened Sep 23, 2024 by lucajovine
2
Could we track how long one AlphaFold program run?
#1018 opened Sep 20, 2024 by WenWu-Bio
1
Dockerfile problem: jaxlib-0.1.75+cuda11.cudnn805-cp37-none-manylinux2010_x86_64.whl is not a supported wheel on this platform
#1017 opened Sep 19, 2024 by WenWu-Bio
Segment default 段错误，import pdbfixer，and from stimtk import app
#1015 opened Sep 11, 2024 by zhangyichen534
1
Weird Inference Behavior with GPU: Sometimes it works or Segmentation Fault/Filesystem Space Error
#997 opened Aug 2, 2024 by juliocesar-io
Question about the self-distillation dataset
#996 opened Aug 1, 2024 by raouf-keskes
Running AlphaFold on models larger than AMD GPU available memory
#958 opened Jul 23, 2024 by dipietrantonio
1
Is the AlphaFold2 PDB structures available for download predicted using the UniProt canonical sequence?
#957 opened Jul 17, 2024 by yang-arina
Inference speed question.
#956 opened Jul 11, 2024 by Lix1993
ValueError: Minimization failed after 100 attempts.
#955 opened Jun 30, 2024 by zcswnm
4
Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9
#953 opened Jun 26, 2024 by rafaeltiveron
7
Cannot download pdb70 database
#952 opened Jun 25, 2024 by Lix1993
@YiningWang2
#951 opened Jun 21, 2024 by fereidoon27
optimize alphafold2 speed on different GPUs
#950 opened Jun 18, 2024 by gorliver
Bulk download from AlphaFold3 server
#949 opened Jun 15, 2024 by johnnytam100
alphafold crash causes nvml library mismatch which cannot be resolved. must reinstall ubuntu OS
#948 opened Jun 10, 2024 by rlwoltz
2
Alphafold
#946 opened Jun 7, 2024 by Zeko19981
InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform
#945 opened Jun 6, 2024 by ocstx
13
Using rotamers for mutations
#943 opened Jun 4, 2024 by n1812
1
The request and urllib3 version dependency conflict problem occurs, and the error ocker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked' appears
#942 opened Jun 3, 2024 by hezhiqiang8909
ProTip! Follow long discussions with comments:>50.