Version 0.12:

* Continuous integration on linux, windows using Python 2.7 and 3.4+
* Drop support of Python 2.6, 3.2, 3.3 and debian6 packaging
* New radial output units: Reciprocal spacing squared and log(q)
**ID02**
* GPU accelerate version of ai.separate (Bragg & amorphous) **ID13**
* Quantile filtering in pyFAI-average **ID02**
* New graphical application for diffraction imaging **ID21**
* Migrate to a common structure with *silx* (reorganize tests,
benchmarks, ...)
* Extensions (binary sub-modules) have all been moved to *ext* directory
* Many improvements multigeometry integrators
* Compatibility with the copy module (copy.deepcopy) for azimuthal
integrator **ID02**
* Distortion correction works also for non-contiguous detectors
* Update documentation and provide advanced tutorials:
    - Introduction to pyFAI using the jupyter notebook
    - detector calibration **ID15, BM02**
    - Correction of detector distortion, examples of pixel detectors.
    - calibrant calculation **ID30**
    - error handling **ID02, BM29**
* pyFAI-integrate can now be used with or without GUI
* Many new detectors (ADSC, Pilatus CdTe, Apex II, Pixium):
    - support for non-flat/curved detectors (Aarhus)
    - non-contiguous detectors (WOS Xpad)
* Include tests and benchmarking tools as part of the library
* Better testing.

MANIFEST.in

@@ -20,4 +20,6 @@ include bootstrap.py
 include README.rst
 include CHANGELOG.txt
 include TODO.txt
+include copyright
 recursive-include scripts *.py 
+recursive-include package/debian *

doc/build/_sources/api/modules.txt

@@ -0,0 +1,15 @@
+pyFAI API
+=========
+
+This chapter describes the programming interface of pyFAI, so what you can expect after having launched ipython and typed:
+..
+
+	import pyFAI
+
+The most important class is AzimuthalIntegrator which is an object containing both the geometry (it inherits from Geometry, another class)
+and exposes important methods (functions) like integrate1d and integrate2d.
+
+.. toctree::
+   :maxdepth: 4
+
+   pyFAI

doc/build/_sources/api/pyFAI.txt

@@ -0,0 +1,195 @@
+
+:mod:`pyFAI` Package
+--------------------
+
+.. automodule:: pyFAI.__init__
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`azimuthalIntegrator` Module
+---------------------------------
+
+.. automodule:: pyFAI.azimuthalIntegrator
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`integrate_widget` Module
+------------------------------
+
+.. automodule:: pyFAI.integrate_widget
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`geometry` Module
+----------------------
+
+.. automodule:: pyFAI.geometry
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`geometryRefinement` Module
+--------------------------------
+
+.. automodule:: pyFAI.geometryRefinement
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`detectors` Module
+-----------------------
+
+.. automodule:: pyFAI.detectors
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`spline` Module
+--------------------
+
+.. automodule:: pyFAI.spline
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`opencl` Module
+--------------------
+
+.. automodule:: pyFAI.opencl
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`ocl_azim` Module
+----------------------
+
+.. automodule:: pyFAI.ocl_azim
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`ocl_azim_lut` Module
+--------------------------
+
+.. automodule:: pyFAI.ocl_azim_lut
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`ocl_azim_csr` Module
+--------------------------
+
+.. automodule:: pyFAI.ocl_azim_csr
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`ocl_azim_csr_dis` Module
+------------------------------
+
+.. automodule:: pyFAI.ocl_azim_csr_dis
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+:mod:`worker` Module
+--------------------
+
+.. automodule:: pyFAI.worker
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`io` Module
+----------------
+
+.. automodule:: pyFAI.io
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`calibration` Module
+-------------------------
+
+.. automodule:: pyFAI.calibration
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`peak_picker` Module
+-------------------------
+
+.. automodule:: pyFAI.peak_picker
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`massif` Module
+--------------------
+
+.. automodule:: pyFAI.massif
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`blob_detection` Module
+----------------------------
+
+.. automodule:: pyFAI.blob_detection
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`calibrant` Module
+-----------------------
+
+.. automodule:: pyFAI.calibrant
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+:mod:`distortion` Module
+------------------------
+
+.. automodule:: pyFAI.distortion
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`worker` Module
+--------------------
+
+.. automodule:: pyFAI.worker
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`units` Module
+-------------------
+
+.. automodule:: pyFAI.units
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`utils` Module
+-------------------
+
+.. automodule:: pyFAI.utils
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+:mod:`gui_utils` Module
+-----------------------
+
+.. automodule:: pyFAI.gui_utils
+    :members:
+    :undoc-members:
+    :show-inheritance:
+

doc/build/_sources/biblio.txt

@@ -0,0 +1,75 @@
+:Author: Jérôme Kieffer
+:Date: 31/05/2015
+:Keywords: list of references
+
+.. [SRI2012] PyFAI, a versatile library for azimuthal regrouping
+   J. Kieffer & D. Karkoulis
+   J. Phys.: Conf. Ser. 425 202012
+   http://dx.doi.org/10.1088/1742-6596/425/20/202012
+
+.. [EPDIC13] PyFAI: a Python library for high performance azimuthal integration on GPU
+   J. Kieffer & J. P. Wright,
+   Powder Diffraction / Volume 28 / Supplement S2 / September 2013, pp S339-S350
+   http://dx.doi.org/10.1017/S0885715613000924
+
+.. [FIT2D] Hammersley A. P., Svensson S. O., Hanfland M., Fitch A. N. and Hausermann D.
+   1996 High Press. Res. vol14 p235–248
+
+.. [SPD] Bösecke P. 2007 J. Appl. Cryst. vol40 s423–s427
+
+.. [EDNA] Incardona M. F., Bourenkov G. P., Levik K., Pieritz R. A., Popov A. N. and Svensson O.
+   2009 J. Synchrotron Rad. vol16 p872–879
+
+.. [PyMca] Solé V. A., Papillon E., Cotte M., Walter P. and Susini J.
+   2007 Spectrochim. Acta Part B vol vol62 p63 – 68
+
+.. [PyNX] Favre-Nicolin V., Coraux J., Richard M. I. and Renevier H.
+   2011 J. Appl. Cryst. vol44 p635–640
+
+.. [IPython] Pérez F and Granger B E
+   2007 Comput. Sci. Eng. vol9 p21–29 URL http://ipython.org
+
+.. [NumPy] Oliphant T E 2007 Comput. Sci. Eng. vol9 p10–20
+
+.. [Cython] Behnel S, Bradshaw R, Citro C, Dalcin L, Seljebotn D and Smith K 2011 Comput. Sci. Eng. vol13 p31 –39
+
+.. [OpenCL] Khronos OpenCL Working Group 2010 The OpenCL Specification, version 1.1 URL http://www.khronos.org/registry/cl/specs/opencl-1.1.pdf
+
+.. [FabIO] Sorensen H O, Knudsen E, Wright J, Kieffer J et al.
+   2007–2013 FabIO: I/O library for images produced by 2D X-ray detectors URL http://fable.sf.net/
+
+.. [Matplotlib] Hunter J D 2007 Comput. Sci. Eng. vol9  p90–95 ISSN 1521-9615
+
+.. [SciPy] Jones E, Oliphant T, Peterson P et al.
+   2001– SciPy: Open source scientific tools for Python URL
+   http://www.scipy.org/
+
+.. [FFTw] Frigo M and Johnson S G
+   2005 Proceedings of the IEEE 93 p 216–231
+
+.. [LImA] The LIMA Project Update
+   S. Petitdemange, L. Claustre, A. Homs, R. Homs Regojo, E. Papillon
+   Proceedings of ICALEPCS2013
+   http://accelconf.web.cern.ch/AccelConf/ICALEPCS2013/html/auth1084.htm
+
+.. [PyOpenCL]  PyCUDA and PyOpenCL: A scripting-based approach to GPU run-time code generation
+   Andreas Klöckner, Nicolas Pinto, Yunsup Lee, Bryan Catanzaro, Paul Ivanov, Ahmed Fasih,
+   Parallel Computing Vol 38, 3, March 2012, Pages 157–174
+   http://dx.doi.org/10.1016/j.parco.2011.09.001
+
+.. [AMD] The American Mineralogist Crystal Structure Database.
+   Downs, R.T. and Hall-Wallace, M. (2003)
+   American Mineralogist 88, 247-250
+   http://rruff.geo.arizona.edu/AMS/amcsd.php
+
+.. [COD] Crystallography Open Database: an open-access collection of crystal structures and platform for world-wide collaboration
+   Saulius Grazulis et al.
+   Nucl. Acids Res. (2012) 40 (D1): D420-D427.
+   http://dx.doi.org/10.1093/nar/gkr900
+   http://www.crystallography.net/
+
+.. [Dpdak] A customizable software for fast reduction and analysis of large X-ray scattering data sets: applications of the new DPDAK package to small angle X-ray scattering and grazing-incidence small angle X-ray scattering,
+   Benecke, G. et al., (2014)
+   J. Appl. Cryst. 47,
+   http://dx.doi.org/10.1107/S1600576714019773
+